Dundee: Petr, June, Riad, Seb, Mark, Will, Simon, Dom
Remote: Jean-Marie, Frances, Josh, Will, Chris, Andreas, David, Melissa
Start: 2:00 pm
(2-3 minutes each)
Bio-Formats 6.1 (Seb)
Near drawing a line on contents of 6.1
BDVReader is 95% done
but looks positive
Couple of unknowns. RC within next week?
B-F but reader in OMERO.
IDR 0.6.7 (Seb)
IDR 0.7.0 - new UI (Will)
notes</u>](https://docs.google.com/document/d/1HHQbMKT3N5yGAOfKHjEuGJX19nBW_ldOXmKPN3q14FU/edit#) or screenshots on design issue
covering front page for IDR allowing to explore the IDR.
old gallery (primarily used as an example previously)
m3 of omero-java-gateway is the last addition. Java clients (Insight and matlab immediately) use it.
coming weeks. Timeline to set in stones, we need BF 6.1 with omero pyramid fix so it can be included
consumers. Chris: not heavily used by a few customers still rely on it.
hit Python gateway.
Started breaking it gateway into files
Will need no other PRs touching that piece of code
Will: probably limited amount of changes to the gateway.
JM: OMERO 5.5 will probably be short-lived. More work into
the pipeline (Python 3)
before coming training workshops.
ongoing and targetted for the upcoming training.
Bio-Formats, Micro-services, upgrading
New webinar coming up in a few weeks
Josh: progress with migrating on top of backbone ms
Pixelbuffer and image-region use backbone on master branch
Remaining one to upgrade to backbone it thumbnail
Seattle report (Josh)
Future of OMERO discussions
E.g. Conversation with Allen Institute for Cell Science
Created their own stack based on SpringBoot
Also have data in several location
Interest in keeping the discussions e.g. can parts of
the stack be re-used without needing everything (micro-services)
Flexible model (EBI & Allen)
Discussions around RDF.
they have all the metadata of the PFF.
Zarr & N-DIM stitching (SpaceTx, Allen, etc) cF. BigStitcher
Problem of the metadata connecting the blobs together
BigStitcher uses GUI based approach to make inferences
Petr/Dom going to Oxford next week
Deadline for next Dundee workshop is May 10th
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)