Attending: Frances, Will, Josh, Dominik, Mark, Petr, Sebastien, June, Jason, Jean-Marie, Simon, Wilma, David, Melissa, Liza, Chris, Kevin, Andreas, Ola, Emil,
Start: 2:00 pm
(2-3 minutes each)
IDR: waiting for idr-next to be available again,
Releasing idr0064 next
However disks for our NFS haven’t been shipped yet!
Discuss - upload direct to production?
Seb: need to upgrade idr-contrib thread. (“big issue with
See notes from this morning.
How to get all the parts together?
Break TODOs into chunks so we know who’s doing what?
Discuss on Thursday
GPFS/VMWare: nothing new on pricing.
E-mail: Prioritizing migration in case necromancer dies
Looking into abilities of Google Suite
And using Outlook for any remaining items.
Upcoming questions about outstanding hosts.
Looking at Bio-Formats to raw use-cases.
Test with HCS datasets
Isyntax -> raw -> OME-TIFF - fixing chunking issues
Small chunk sizes are expensive for large amounts of data
E.g. rgb as 3 chunks can be e.g 15% slower.
Josh: zarr PR fs-spec - Use UI to pick where to store stuff.
Might need tests to check output of n5, read by zarr etc.
Based on jupyter
Useful for machine learning (e.g. to build ground truth)
powerful for demonstrating. Have looked into repositories for AI training.
Josh: other tools worth looking into are Ilastik or QuPath.
back into OMERO (https://github.com/glencoesoftware/ome-omero-roitool)
J-M: existing integrations for Ilastik/QuPath
EOSC-Life (9-12 months)
A few other EU projects….
Use recorded content except for Jason, JM & Keynote.
public? (youtube)? Hosting ourselves? (more work).
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)