Attending: Josh, Will, Frances, Mark, Chris, Simon, Petr, Melissa, Sebastien, Wilma,
David, Dominik, Jason, Jean-Marie, Andreas, Emil,
Start: 2:00 pm
(2-3 minutes each)
Idr0071 needs more testing: Simon:
32 images have excess metadata: Potential workaround
Duplicate Project/Dataset names causing issues
Plan to import then assess
Goal is to have masks in ome-zarr, i.e. bottom portion of:
Simon working on spec
Dundee team working on ‘bottom’ path above
GS working on ‘top’ path.
Omero-rois (python, OME team) used in IDR
Omero-roitool (Java, GS) uses existing Java libs
inquiry about location of spec to add support
Discussion with Erich Bremer - Stony Brook.
Image Features with Hilbert Curves</u>](https://arxiv.org/abs/2005.06469)
be used within Zarr.
publication of one (IIF-compatible) which could be submitted back. Also has an CECOG-like HTTP implementation for Bio-Formats.
native-image (from GraalVM) to compile Bio-Formats to native code.
VMWare hypervisor and firmware updates
require VMs to be updated at our leisure (proposed timescale: over two week period following start of work by UoD IT)
Mail migration: Last week’s testing passed, list migration
underway this week.
Emil, Wilma to latter? Maybe Kevin? Happy to go with what works for Glencoe. Current omero-team members are Chris, Melissa, Stick.
Bioformat2raw work on Plates and Memoizer
n5/zarr usage in Java investigation
Workshop videos? July?
JM: video recording? Quality? zoom vs OBS etc?
Jason: needs discussion later
Community meetings? More frequent meetings suggested.
Get some more work done first
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
If desk is taped off, choose another
If you want to work in office, let Jason know.
(20-25 minutes plus 15 minutes questions max)