Attending: Jason, Josh, Petr, Wilma, J-m (Notes), Mark, Frances, June, Andreas, Dominik,
Talley Lambert, Simon, Kevin, Erin, Chris, Juna Nuñez-Iglesias, Melissa
Start: 2:00 pm
(2-3 minutes each)
Preparing for next release:
depending on testing
PR</u>](https://github.com/ome/omero-ms-zarr/pull/60) opened for the first round of labeled images incl. Color support, etc.
No support for overlap or multiscales
Masks future work
Likely to change name/folder from “masks” to “labels”
Add in multiscale
Extend colors specification
Support links to external data sources
Location for storing “mask author” (ORCID, etc)
In terms of getting the JSON formatting correct, will also
look at basic metadata:
Image name, physical pixel size
Dimension order, channel names,
Copyright information (IDR)
Napari feedback (Juan & Talley)
napari, etc.). Don’t have an internal metadata model. There’s just a dict where stuff can be dropped. No knowledge of dimensions. What happens if 2 separate nodes want to know something about a label? OME model would be a natural thing to standardize on. (Dimensionality)
Josh: ask at regular intervals where the images are.
Juan: hierarchical model:
Josh: going in the direction of more hierarchies
Chris: balancing issue on filesystem
Mattias working on Zarr spec (czi grant): not sure if
the current state could fix issues. Spec meeting on Friday
possible but still work from raw arrays.
type & shape of array, and then identify algorithms.
Juan: should also be pure python (no GUI)
I.e. some lite wrapping of arrays. Juan: type annotations rather than classes.
(or if necessary copy) files in /Files as well as /ManagedRepository.
No database upgrade required.
be fine to hardlink.
problem (one file but two copies of metadata)
Simon: copy vs symlink
Petr: importance of documentation in terms of explanation
Deep copy issue:
deletion (cf. Thomas Zobel)
Change from 5.6.1 custom build to be migrated to OS
Melissa: issue with processed data generating non normalized
floating data in Tiff
doing its own stuff
Few more steps to do
Shutting down help.o.org -> redirecting to guide
Community meeting output:
start to organise things while taking time off away from zoom.
Ome face masks coming out soon
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)