Attending: Seb, Josh, Frances, June, J-m, Mark, David, Simon, Dom, Erin, Ola, Wilma, Andreas (=13)
Chris, Jason, Kevin, Melissa, Will
Start: 2:00 pm
(2-3 minutes each)
and HPA run8
more reference studies as well.
Masks are now called labels
to mypy) Feedback welcome.
Feedback welcome - API changes
OpenCV works nicely for downscaling - will be included in
large for Java!
straightforward to add.
require synchronization with QuPath (+ export scripts)
but large volume of them
Chris: recent paper on compression and impact on results
JAM: running multiple compressions
Jason: what’s needed to move towards ‘release’
Seb: can we share before we do lots of IDR testing?
Jason: write 1k words and sent to Journal?
discussion & community feedback
Chris: maybe pick a partner for ‘early feedback’?
Storage failure last week:
2 DB gone
Postgres recovered quite well.
Demo segfault after restart
UoD data recovery worked well
Postgres is 9.6 - Upgrading to 11 (dump, upgrade, restore)
Simon: offline copy of nightshade mailing list would help
failure” sounds worse than it is.
Older LDAP server - should be working again now
Need to migrate to newer LDAP server soon
Glencoe - Chris
TileDB support in BioFormats2raw
Zarr inputs & outputs to work with CellProfiler and other tools
N5 repo - made comments
PR on TileDB stuff soon - working on metadata issues
FYI: Looking at omero-guides to sort out some search issues
Ola: using zarr and idr - napari to load images from backend.
Chris: Dockerhub to start throttling polls soon
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)
Bio-formats options file
Alternate representations of the same data.
Both could be “right”
API questions: naming/linking convention?
Simon: s3 - store authentication in INI files?