Attending: Petr, Josh, Simon, Frances, J-m, June, Mark, Seb, Melissa, David, =10
Kevin, Wilma, Chris, Will, Jason, Emil, Erin, Ola
Start: 2:00 pm
(2-3 minutes each)
Release planned for end of month.
1 screen in and ready
idr0094 (big covid screen)
Some data missing from idr0094. Lots of compounds handling.
identifiers as standard. Some cleanup needed after publication
Lots of challenges with e.g. 1TB of data.
in Human cells with drugs.
EMBL (ChEMBL?) also involved
JM: we are encouraged to use this open data for training
Spec status: merged, uploaded data, one bug, then issue
Bug in public access
feedback from community?
EMBL Heidelberg call - after global bio-imaging meeting
Tags, calls, etc.
Ilastik also compatible format. Dominic Kutra
Emil: Use Ilastik for segmentation, CellProfiler for feature
remaining</u>](https://github.com/ome/omero-py/pull/251), 5.8.0 release tomorrow?
Will merge after this meeting.
Release along with omero-web.
OMERO deep-copy PR ready to merge.
Good to merge. Error message improvement can be follow-up.
CLI allows various options for different workflows.
Seb: announce py/web with duplicate server release?
TileDB and zarr work ongoing.
Looking at tools for spatial indexing from Geo-spatial community
re: Pete Bankhead /Qupath. GeoIs, Shapely (python).
Need to store large amounts of shapes and query by coordinates.
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
(20-25 minutes plus 15 minutes questions max)