OME 2024 Community Meeting

Open data, advanced imaging data applications, and more

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Day 1, May 29

BioImage Data Resources and Community.

Please Note

Presentations are in School of Life Sciences, Small Lecture Theatre.
Registration, coffee, lunch and networking are in Wellcome Trust Building Atrium.

08:30 - 09:00 UTC+1
Registration with coffee

09:00 - 09:15 UTC+1
Meeting Open and Welcome

Jason Swedlow, University of Dundee

Session 1

A Tour of BioImage Data Resources.

09:15 - 09:40 UTC+1
An update: OMERO in an evolving RDM landscape

Stefanie Weidtkamp-Peters, Heinrich-Heine University Duesseldorf

09:40 - 10:05 UTC+1
Open image data at scale: from molecules to organisms

Matthew Hartley, EMBL-EBI

10:05 - 10:30 UTC+1
SSBD update and RIKEN Open Life Science Platform

Shuichi Onami, RIKEN BDR

10:30 - 10:55 UTC+1
A Distributed, FAIR Infrastructure for Bioimaging in the Netherlands

Katy Wolstencroft, Leiden University

10:55 - 11:20 UTC+1
Image Data Integration and Publication at Scale: Update on The IDR

Frances Wong, University of Dundee
William Moore, University of Dundee

11:20 - 11:45 UTC+1

Session 2

The Growing OMERO Community

11:45 - 12:10 UTC+1
Integrated bioimage data management architecture at France BioImaging

Guillaume Gay, France BioImaging, Montpellier

12:10 - 12:35 UTC+1
Making our data FAIR: the pixels access problem

Eric Perlman, The Jackson Laboratory
Erick Ratamero, The Jackson Laboratory

12:35 - 13:10 UTC+1
Update on OMERO and Ecosystem

Jason Swedlow, University of Dundee
Erin Diel, Glencoe Software

13:10 - 14:00 UTC+1

Session 3

Growing OME Formats Community

14:00 - 14:25 UTC+1
Bio-Formats updates

Jason Swedlow, University of Dundee
David Gault, University of Dundee

14:25 - 14:50 UTC+1
Update on OME-NGFF

Josh Moore, German BioImaging

14:50 - 15:15 UTC+1
Interoperability for large images with OME-Zarr and WEBKNOSSOS

Norman Rzepka, Scalable Minds

15:15 - 15:40 UTC+1
Towards FAIR and scalable bioimage analysis workflows using OME-Zarr

Virginie Uhlmann, University of Zurich

15:40 - 16:10 UTC+1

16:10 - 16:35 UTC+1
Metadata Matters 2024

Josh Moore, German BioImaging

16:35 - 17:30 UTC+1
Lightning talks by members of the community

Various Speakers, OME Community

17:30 - 18:45 UTC+1
Poster Session/Reception - The Street

19:00 - UTC+1
Dinner at the Jute Cafe, Dundee Contemporary Arts

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