tags: Tuesday
—
2025-07-01
Attending: Petr, Dom, JM, Andreas, Khaled, Frances, Kyle, David, Seb, Chris, Jason, Melissa, Kevin
Start: 2:00 pm UK
Project Status
(2-3 minutes each)
- IDR
- Working on prod128, waiting for some images from submitter. Khaled looking into timeout tile loading errors.
- New studies will be idr0151 (drosophila, antibody staining).
- OMERO
- OMERO.web: no updates
- OMERO.server 5.6.16 - released
- Working on micro services and integrated testing of components
- Bio-Formats
- Not much. Slowing down because of summer holidays. Working on 8.3.0 though, release after summer, probably Sept.
- JM: Because of website migration, ome schema validation with xmlvalid utility didn’t work. - https://github.com/ome/bioformats/issues/4313
- NGFF
- JM: Good progress with Will on image “registration”. Using public zarrs. Should work now with anonymous and auth. Going to open PRs from OME repository against Glencoe repository.
- Supported version is 0.4. Seb: Priority probably to support newer versions than backwards compatibility. Chris: Reason for that was AWS.
- JM/Dom: Work on build system for merge build for testing.
- Techdev: Newcastle group pushing for viewer (biongff viewer), will present at next NGFF meeting.https://github.com/BioNGFF/biongff-viewer Will also present demo on registration workflow.
- Dom: Will also open PR from OME for the axes support.
-
GerBI
- Glencoe
- Chris: Upgrading microservice infrastructure. Vertex3 -> 4.
- Glencoe meeting next week in Edinburgh, probably miss next Tue meeting.
- Community
- Jason: Josh and I attended BioImagingUK meeting. Lots of discussion on OME -Zarr, etc. and also the Skills project
- Workshop in India. Follow-ups on server installations
- Next outreach will be Brno in Dec.
AOB
(5 min. max; tech. Discussion should be highlighted to relevant people and rescheduled)
- Frances: Shall we have meeting next week? JM: Maybe cancel, have to check with Tom and Josh.
Main Topic
(20-25 minutes plus 15 minutes questions max)
