2020 OME Community Meeting

Open data, advanced imaging data applications, and more

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Day 2 - Wednesday, May 27

Talks on advanced imaging data applications


Please Note

The schedule includes pre-recorded videos organised by topic followed by group discussions.
Please find time to watch the videos before the corresponding discussion on each topic.
All times are in UK - British Summer Time (GMT+1).

data modeling -
Special Topic: Next Generation File Formats
Video Talks for Discussion: Next Generation File Formats

Ontology-based imaging data integration using OME-OWL
Norio Kobayashi, RIKEN

Next Generation File Formats for BioImaging
Josh Moore, OME Dundee

Adaptable Community Standards and Intuitive Metadata Collection Tools for Quantitative Microscopy
Caterina Strambio De Castillia, University of Massachusetts Medical School

coffee and desktop and laptop -
Special Topic: Integrated Applications and Workflows
Video Talks for Discussion: Integrated Applications and Workflows

OMERO Analysis
Jean-Marie Burel, OME Dundee

Improving access to reproducible, quantitative bioimage analysis
Nicholas Sofroniew, Chan Zuckerberg Initiative

QuPath
Pete Bankhead, University of Edinburgh

scOMERO
Ola Tarkowska & Omer Bayraktar, Wellcome Sanger Centre

ImageJ plugin for IDR
Craig Russell, EMBL-EBI

Nucleome Browser
Jian Ma, Carnegie Mellon University

11:00 - 13:00
Discussion: Next Generation File Formats

Moderator: Josh Moore

16:00 - 16:30
OME Status and Update

Jason Swedlow, OME Dundee

16:30 - 17:00
Glencoe Software and OME: Collaboration Update

Chris Allan, Glencoe Software

17:00 - 19:00
Discussion: Integrated Applications and Workflows

Moderators: Jean-Marie Burel and Chris Allan

19:00 - TBD
Hangout

Details to follow soon.


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